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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
total RNA-seq
75
single cell RNA-seq
51
ChIP-seq
12
ATAC-seq
10
WGBS
Assay category
247
Transcription
51
DNA binding
12
DNA accessibility
10
DNA methylation
Target of assay
30
control
15
histone
15
histone modification
10
narrow histone mark
6
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
125
August, 2017
39
July, 2018
37
February, 2023
34
April, 2018
26
September, 2018
19
September, 2020
11
October, 2018
7
August, 2020
6
February, 2021
6
September, 2017
4
November, 2018
3
August, 2018
1
June, 2018
1
March, 2019
1
October, 2017
Available data
689
bam
623
bigWig
471
fastq
417
tsv
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
txt
3
cool
1
bedpe
1
hdf5
Organism
319
Homo sapiens
Biosample type
190
primary cell
130
tissue
Organ
320
pancreas
180
epithelium
97
liver
49
connective tissue
35
adipose tissue
13
embryo
10
spleen
7
brain
6
blood
6
bodily fluid
2
musculature of body
2
vasculature
1
blood vessel
Project
251
AMP
69
HPAP
Genome assembly (visualization)
232
GRCh38
218
hg19
Lab
249
AMP-T2D consortium
69
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
files.file_type!
txt
bed narrowPeak
BIOSAMPLE
ASSAY
320 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
12
6
7
6
pancreatic beta cell
21
12
6
3
pancreatic acinar cell
4
9
pancreatic ductal cell
4
9
pancreatic endocrine cell
12
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tissue
islet of Langerhans
91
6
16
2
body of pancreas
8
2
pancreas
3
2
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