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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
total RNA-seq
152
ATAC-seq
140
ChIP-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
391
Transcription
Date released
120
July, 2018
89
August, 2017
42
February, 2023
41
May, 2021
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
5
March, 2020
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
330
bam
326
tsv
324
bigWig
178
fastq
txt
Organism
391
Homo sapiens
Biosample type
277
tissue
81
primary cell
33
cell line
Organ
474
connective tissue
398
adipose tissue
391
pancreas
189
liver
131
epithelium
72
heart
61
blood vessel
61
vasculature
58
bone element
56
artery
19
eye
17
brain
14
embryo
11
kidney
7
limb
6
musculature of body
5
nerve
1
pericardium
1
spinal cord
Project
329
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
324
GRCh38
324
hg19
Lab
331
AMP-T2D consortium
53
Klaus Kaestner, Upenn
6
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
33
inconsistent ontology term
files.file_type!
txt
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
391 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
272
body of pancreas
3
pancreas
2
primary cell
pancreatic alpha cell
52
pancreatic beta cell
21
pancreatic acinar cell
4
pancreatic ductal cell
4
cell line
EndoC_BH1
33
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