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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
7
DNase-seq
6
total RNA-seq
1
Hi-C
Assay category
21
DNA binding
7
DNA accessibility
6
Transcription
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
transcription factor
6
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
control
Date released
19
August, 2017
6
May, 2022
4
June, 2019
2
November, 2018
2
October, 2019
2
September, 2017
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
35
Homo sapiens
Biosample type
33
tissue
2
cell line
Organ
140
kidney
88
bone element
36
limb
35
brain
35
pancreas
34
musculature of body
30
heart
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
4
skeleton
3
embryo
2
nerve
2
vein
1
spleen
Project
35
AMP
Genome assembly (visualization)
29
GRCh38
27
hg19
Lab
29
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
21
6
body of pancreas
4
pancreas
2
cell line
Panc1
1
1
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