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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
23
ATAC-seq
13
DNase-seq
2
FAIRE-seq
Assay category
411
DNA binding
Target of assay
324
transcription factor
84
histone
84
histone modification
81
recombinant protein
61
RNA binding protein
51
broad histone mark
33
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
50
December, 2017
48
November, 2018
40
October, 2018
17
August, 2017
6
October, 2019
1
May, 2019
Available data
708
bam
599
fastq
593
bigWig
553
bed narrowPeak
411
bigBed narrowPeak
105
tagAlign
70
bed broadPeak
58
bigBed broadPeak
27
bed bed3+
3
tar
Organism
405
Homo sapiens
Biosample type
299
cell line
98
tissue
14
in vitro differentiated cells
Organ
352
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
36
epithelium
24
kidney
24
nerve
21
artery
15
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
411
AMP
Genome assembly (visualization)
407
hg19
379
GRCh38
Lab
411
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
411 results
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Clear Filters
ChIP-seq
cell line
HepG2
293
Panc1
6
tissue
liver
38
body of pancreas
26
endocrine pancreas
14
pancreas
13
right lobe of liver
7
in vitro differentiated cells
hepatocyte
14
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