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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
22
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
58
DNA binding
32
DNA accessibility
Target of assay
48
histone
48
histone modification
29
broad histone mark
19
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
40
October, 2018
16
August, 2017
14
September, 2018
7
October, 2019
5
September, 2017
4
June, 2019
3
November, 2018
1
May, 2019
Available data
688
bam
621
bigWig
470
fastq
417
tsv
213
bed narrowPeak
90
bigBed narrowPeak
80
zippedFastqFolder
28
bed bed3+
20
bed broadPeak
18
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
Organism
85
Homo sapiens
Biosample type
61
tissue
22
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
90
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
90
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
90
AMP-T2D consortium
Audit category:
5
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
90 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
pancreas
12
2
1
endocrine pancreas
14
islet of Langerhans
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
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