Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
41
DNase-seq
22
ATAC-seq
2
FAIRE-seq
Assay category
72
DNA binding
65
DNA accessibility
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
45
June, 2019
40
October, 2018
16
August, 2017
14
September, 2018
7
May, 2019
7
October, 2019
5
September, 2017
3
November, 2018
Available data
745
bam
689
bigWig
472
fastq
426
tsv
273
bed narrowPeak
137
bigBed narrowPeak
80
zippedFastqFolder
66
bed broadPeak
62
bed bed3+
40
bigBed broadPeak
33
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
9
bedpe bed3+
9
hic
7
txt
3
cool
1
bedpe
Organism
132
Homo sapiens
Biosample type
99
tissue
31
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
90
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
137
AMP
Genome assembly (visualization)
135
hg19
134
GRCh38
Lab
137
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
5
inconsistent control read length
inconsistent assembly
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
137 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
body of pancreas
26
4
muscle of leg
6
13
muscle of arm
17
pancreas
12
2
1
endocrine pancreas
14
+ See 3 more…
primary cell
pancreatic beta cell
7
skeletal muscle satellite cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 1 more…
cell line
Panc1
6
1
See all biosamples
Download