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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
22
ATAC-seq
8
DNase-seq
4
WGBS
2
FAIRE-seq
2
RRBS
Assay category
59
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
49
histone
49
histone modification
30
broad histone mark
19
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
40
October, 2018
17
August, 2017
14
September, 2018
7
November, 2018
7
October, 2019
5
September, 2017
4
June, 2019
2
July, 2019
1
May, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
91
Homo sapiens
Biosample type
68
tissue
22
primary cell
7
cell line
Organ
361
liver
129
brain
108
kidney
102
heart
97
pancreas
85
limb
85
vasculature
82
epithelium
80
blood vessel
54
blood
54
bodily fluid
51
musculature of body
31
connective tissue
26
nerve
25
artery
18
ureter
15
spleen
13
vein
12
adipose tissue
7
eye
1
pericardium
Project
97
AMP
Genome assembly (visualization)
93
GRCh38
91
hg19
Lab
97
AMP-T2D consortium
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
97 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
RRBS
tissue
body of pancreas
26
4
2
pancreas
13
2
2
1
1
endocrine pancreas
14
islet of Langerhans
1
1
1
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
cell line
Panc1
6
1
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