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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
44
DNase-seq
22
ATAC-seq
3
FAIRE-seq
Assay category
174
DNA binding
69
DNA accessibility
Target of assay
160
histone
160
histone modification
102
broad histone mark
58
narrow histone mark
14
transcription factor
10
RNA binding protein
Date released
63
November, 2017
40
October, 2018
36
June, 2019
29
May, 2019
27
October, 2019
17
August, 2017
14
September, 2018
6
October, 2017
5
November, 2018
5
September, 2017
1
July, 2019
Available data
1034
bam
930
bigWig
501
tsv
492
fastq
491
bed narrowPeak
243
bigBed narrowPeak
143
tagAlign
80
zippedFastqFolder
72
bed broadPeak
68
bed bed3+
49
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
txt
4
hdf5
3
cool
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
237
Homo sapiens
Biosample type
203
tissue
33
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
243
AMP
Genome assembly (visualization)
240
GRCh38
179
hg19
Lab
243
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
243 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
body of pancreas
26
4
brain
6
14
tibial artery
18
2
layer of hippocampus
16
pancreas
13
2
1
+ See 20 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
astrocyte of the cerebellum
2
1
+ See 4 more…
cell line
Panc1
6
1
See all biosamples
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