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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
40
DNase-seq
22
ATAC-seq
3
FAIRE-seq
Assay category
153
DNA binding
65
DNA accessibility
Target of assay
140
histone
140
histone modification
88
broad histone mark
52
narrow histone mark
13
transcription factor
9
RNA binding protein
Date released
63
November, 2017
40
October, 2018
34
June, 2019
26
May, 2019
17
August, 2017
14
September, 2018
7
October, 2019
6
October, 2017
5
November, 2018
5
September, 2017
1
July, 2019
Available data
932
bam
845
bigWig
492
fastq
443
tsv
417
bed narrowPeak
218
bigBed narrowPeak
137
tagAlign
80
zippedFastqFolder
68
bed broadPeak
64
bed bed3+
45
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
txt
4
hdf5
3
cool
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
212
Homo sapiens
Biosample type
178
tissue
33
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
218
AMP
Genome assembly (visualization)
215
GRCh38
154
hg19
Lab
218
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
218 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
body of pancreas
26
4
brain
6
14
layer of hippocampus
16
pancreas
13
2
1
endocrine pancreas
14
+ See 18 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
astrocyte of the cerebellum
2
1
+ See 4 more…
cell line
Panc1
6
1
See all biosamples
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