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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
DNase-seq
22
ATAC-seq
3
FAIRE-seq
Assay category
153
DNA binding
25
DNA accessibility
Target of assay
140
histone
140
histone modification
88
broad histone mark
52
narrow histone mark
13
transcription factor
9
RNA binding protein
Date released
63
November, 2017
40
October, 2018
26
May, 2019
16
August, 2017
14
September, 2018
6
October, 2017
6
October, 2019
5
September, 2017
1
July, 2019
1
November, 2018
Available data
892
bam
805
bigWig
487
fastq
443
tsv
377
bed narrowPeak
178
bigBed narrowPeak
137
tagAlign
80
zippedFastqFolder
29
bed broadPeak
25
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
7
bedpe bed3+
7
hic
6
bigBed broadPeak
6
txt
4
hdf5
3
cool
1
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
172
Homo sapiens
Biosample type
144
tissue
28
primary cell
6
cell line
Organ
353
liver
95
brain
83
pancreas
72
vasculature
70
blood vessel
64
heart
59
epithelium
54
blood
54
bodily fluid
48
limb
25
kidney
24
nerve
21
artery
19
connective tissue
14
musculature of body
12
spleen
11
vein
8
adipose tissue
2
eye
Project
178
AMP
Genome assembly (visualization)
175
GRCh38
126
hg19
Lab
178
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
178 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
body of pancreas
26
layer of hippocampus
16
endocrine pancreas
14
pancreas
13
1
temporal lobe
13
+ See 9 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
astrocyte of the cerebellum
2
+ See 2 more…
cell line
Panc1
6
See all biosamples
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