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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
40
DNase-seq
2
FAIRE-seq
Assay category
65
DNA binding
42
DNA accessibility
Target of assay
55
histone
55
histone modification
34
broad histone mark
21
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
40
October, 2018
36
June, 2019
14
August, 2017
7
May, 2019
7
October, 2019
3
November, 2018
Available data
539
bam
488
bigWig
316
tsv
215
fastq
197
bed narrowPeak
107
bigBed narrowPeak
66
bed broadPeak
62
bed bed3+
39
bigBed broadPeak
34
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
7
txt
6
bedpe bed3+
6
hic
1
bedpe
1
hdf5
Organism
101
Homo sapiens
Biosample type
100
tissue
primary cell
7
cell line
Organ
356
liver
116
brain
88
heart
88
kidney
84
limb
69
pancreas
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
26
nerve
25
artery
18
ureter
15
epithelium
13
connective tissue
13
spleen
10
adipose tissue
3
eye
Project
107
AMP
Genome assembly (visualization)
105
hg19
104
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
muscle of leg
6
13
muscle of arm
17
pancreas
13
2
1
endocrine pancreas
14
+ See 3 more…
cell line
Panc1
6
1
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