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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
39
DNase-seq
2
FAIRE-seq
Assay category
59
DNA binding
41
DNA accessibility
Target of assay
49
histone
49
histone modification
31
broad histone mark
18
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
40
October, 2018
36
June, 2019
14
August, 2017
7
May, 2019
3
November, 2018
Available data
473
bam
430
bigWig
282
tsv
215
fastq
174
bed narrowPeak
100
bigBed narrowPeak
65
bed broadPeak
60
bed bed3+
38
bigBed broadPeak
31
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
7
txt
5
bedpe bed3+
5
hic
1
bedpe
Organism
94
Homo sapiens
Biosample type
100
tissue
31
primary cell
7
cell line
Organ
116
brain
88
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
100
AMP
Genome assembly (visualization)
98
hg19
97
GRCh38
Lab
100
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
muscle of leg
6
13
muscle of arm
17
pancreas
13
2
1
endocrine pancreas
14
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