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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
28
ChIP-seq
19
ATAC-seq
6
WGBS
2
FAIRE-seq
Assay category
59
Transcription
28
DNA binding
21
DNA accessibility
6
DNA methylation
Target of assay
28
control
Date released
37
February, 2023
24
May, 2022
16
August, 2017
16
September, 2020
9
October, 2018
6
February, 2021
4
September, 2017
1
March, 2019
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
68
bam
26
bed narrowPeak
12
bigWig
11
tagAlign
11
tsv
7
bed broadPeak
7
bedpe bed3+
7
hic
6
txt
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
113
Homo sapiens
Biosample type
71
primary cell
43
tissue
Organ
122
liver
114
pancreas
76
epithelium
26
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
6
brain
2
musculature of body
2
vasculature
1
blood vessel
Project
59
HPAP
55
AMP
Genome assembly (visualization)
363
hg19
GRCh38
Lab
59
Klaus Kaestner, Upenn
30
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
assembly!
GRCh38
BIOSAMPLE
ASSAY
114 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
FAIRE-seq
primary cell
pancreatic alpha cell
42
6
6
pancreatic beta cell
11
6
tissue
islet of Langerhans
6
5
19
1
body of pancreas
8
pancreas
3
1
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