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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
28
ChIP-seq
11
ATAC-seq
10
WGBS
Assay category
59
Transcription
28
DNA binding
11
DNA accessibility
10
DNA methylation
Target of assay
28
control
Date released
37
February, 2023
19
September, 2020
15
August, 2017
9
October, 2018
7
August, 2020
6
February, 2021
6
May, 2022
4
November, 2018
4
September, 2017
1
March, 2019
Available data
108
fastq
80
zippedFastqFolder
54
bam
16
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
107
Homo sapiens
Biosample type
81
primary cell
27
tissue
Organ
108
pancreas
84
epithelium
75
liver
28
connective tissue
23
adipose tissue
10
spleen
8
embryo
6
blood
6
bodily fluid
4
brain
Project
69
HPAP
39
AMP
Genome assembly (visualization)
hg19
357
GRCh38
Lab
69
Klaus Kaestner, Upenn
32
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
assembly!
hg19
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
42
6
7
6
pancreatic beta cell
11
6
3
tissue
islet of Langerhans
6
5
1
body of pancreas
8
2
pancreas
3
2
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