Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
total RNA-seq
119
ChIP-seq
69
single cell RNA-seq
37
ATAC-seq
4
WGBS
3
DNase-seq
Assay category
194
Transcription
119
DNA binding
40
DNA accessibility
4
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
17
transcription factor
8
RNA binding protein
2
control
Date released
152
August, 2017
72
September, 2018
39
July, 2018
34
April, 2018
28
October, 2018
7
August, 2020
7
September, 2017
6
November, 2018
5
October, 2017
3
August, 2018
3
September, 2020
1
June, 2018
Available data
621
bam
611
bigWig
406
tsv
357
fastq
188
bed narrowPeak
89
bigBed narrowPeak
29
bed bed3+
14
bed broadPeak
8
tagAlign
7
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
1
hdf5
Organism
351
Homo sapiens
Biosample type
187
primary cell
170
tissue
Organ
357
pancreas
343
liver
181
epithelium
75
connective tissue
54
blood
54
bodily fluid
23
adipose tissue
19
embryo
16
spleen
15
brain
4
vasculature
2
blood vessel
Project
347
AMP
10
HPAP
Genome assembly (visualization)
363
hg19
357
GRCh38
Lab
346
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
357 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
primary cell
pancreatic alpha cell
10
7
12
13
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
97
23
1
1
body of pancreas
25
4
2
2
pancreas
13
2
See all biosamples
Download