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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
Hi-C
Assay category
8
3D chromatin structure
Date released
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2020
1
October, 2019
Available data
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
8
Homo sapiens
Biosample type
3
primary cell
3
tissue
2
cell line
Organ
8
pancreas
7
epithelium
4
blood vessel
4
vasculature
3
brain
3
heart
3
liver
2
connective tissue
2
musculature of body
1
adipose tissue
1
vein
Project
5
AMP
3
HPAP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bam
BIOSAMPLE
ASSAY
8 results
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Clear Filters
Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
pancreas
1
cell line
EndoC_BH1
1
Panc1
1
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