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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
10
3D chromatin structure
Date released
3
March, 2020
3
October, 2022
2
November, 2019
1
March, 2019
1
October, 2019
Available data
874
bam
778
bigWig
485
tsv
477
fastq
347
bed narrowPeak
174
bigBed narrowPeak
80
zippedFastqFolder
42
bed bed3+
38
bed broadPeak
25
tagAlign
24
bigBed broadPeak
10
hic
9
bedpe bed3+
8
bed bedMethyl
8
bigBed bedMethyl
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
10
Homo sapiens
Biosample type
5
primary cell
4
tissue
1
cell line
Organ
7
pancreas
6
epithelium
3
blood vessel
3
heart
3
vasculature
2
liver
2
musculature of body
2
vein
1
kidney
Project
7
AMP
3
HPAP
Genome assembly (visualization)
10
hg19
Lab
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
4
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
10 results
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Hi-C
primary cell
endothelial cell of umbilical vein
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
islet of Langerhans
2
aorta
1
pancreas
1
cell line
EndoC_BH1
1
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