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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
159
ChIP-seq
69
single cell RNA-seq
56
ATAC-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
159
DNA binding
61
DNA accessibility
10
DNA methylation
Target of assay
109
histone
109
histone modification
56
broad histone mark
53
narrow histone mark
32
control
18
transcription factor
8
RNA binding protein
Date released
177
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
34
April, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
3
May, 2021
1
June, 2018
1
March, 2019
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
476
Homo sapiens
Biosample type
258
primary cell
222
tissue
3
in vitro differentiated cells
Organ
539
liver
483
pancreas
264
epithelium
131
brain
123
connective tissue
60
blood
60
bodily fluid
52
adipose tissue
27
embryo
24
spleen
17
musculature of body
12
vasculature
9
blood vessel
6
artery
6
heart
1
pituitary gland
Project
414
AMP
69
HPAP
Genome assembly (visualization)
371
hg19
359
GRCh38
Lab
388
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic endocrine cell
23
+ See 5 more…
tissue
islet of Langerhans
103
37
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
in vitro differentiated cells
pancreatic PP cell
3
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