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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
8
Hi-C
Assay category
41
DNA methylation
39
DNA accessibility
8
3D chromatin structure
Date released
80
May, 2022
3
October, 2022
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
88
Homo sapiens
Biosample type
83
primary cell
4
tissue
1
cell line
Organ
88
pancreas
85
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
83
HPAP
5
AMP
Genome assembly (visualization)
7
hg19
Lab
83
Klaus Kaestner, Upenn
3
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
88 results
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WGBS
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
3
pancreas
1
cell line
EndoC_BH1
1
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