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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
332
total RNA-seq
74
single cell RNA-seq
47
WGBS
41
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
408
Transcription
47
DNA methylation
41
DNA accessibility
Date released
153
July, 2018
89
August, 2017
80
May, 2022
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
689
bam
623
bigWig
471
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
497
Homo sapiens
Biosample type
275
tissue
188
primary cell
34
cell line
Organ
497
pancreas
478
connective tissue
401
adipose tissue
236
epithelium
174
liver
168
heart
68
blood vessel
68
vasculature
58
artery
58
bone element
26
brain
24
kidney
14
embryo
9
musculature of body
7
limb
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
409
AMP
86
HPAP
2
T1D
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
410
AMP-T2D consortium
86
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
497 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
267
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
31
22
pancreatic beta cell
10
12
16
13
pancreatic acinar cell
4
12
4
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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