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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
total RNA-seq
218
ChIP-seq
103
ATAC-seq
74
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
6
3D chromatin structure
Date released
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
1
October, 2019
Available data
4
bedpe bed3+
4
hic
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Organism
6
Homo sapiens
Biosample type
4
tissue
2
cell line
Organ
6
musculature of body
6
pancreas
5
blood vessel
5
epithelium
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
6
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
6 results
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Hi-C
tissue
islet of Langerhans
3
pancreas
1
cell line
EndoC_BH1
1
Panc1
1
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