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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
337
total RNA-seq
ChIP-seq
74
single cell RNA-seq
69
ATAC-seq
8
DNase-seq
4
Hi-C
4
WGBS
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
1
snATAC-seq
Assay category
413
Transcription
80
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
157
July, 2018
94
August, 2017
56
May, 2021
42
November, 2019
40
September, 2018
39
April, 2018
26
February, 2021
11
March, 2020
7
November, 2018
6
July, 2019
5
October, 2019
5
September, 2017
4
June, 2019
4
October, 2017
3
August, 2018
2
August, 2021
2
October, 2018
1
August, 2022
1
February, 2020
1
February, 2023
1
June, 2018
Available data
466
bam
451
bigWig
410
tsv
229
fastq
56
bed narrowPeak
32
bigBed narrowPeak
8
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
hdf5
Organism
506
Homo sapiens
Biosample type
325
tissue
124
primary cell
58
cell line
Organ
526
connective tissue
507
pancreas
418
adipose tissue
259
heart
237
epithelium
186
liver
158
bone element
134
vasculature
131
blood vessel
111
kidney
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
503
AMP
4
T1D
Genome assembly (visualization)
470
hg19
465
GRCh38
Lab
507
AMP-T2D consortium
152
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
60
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
507 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans
272
24
1
1
1
1
1
body of pancreas
3
4
4
2
2
pancreas
1
2
1
2
1
1
1
primary cell
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
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cell line
EndoC_BH1
33
19
1
2
1
Panc1
1
1
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