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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
total RNA-seq
117
ChIP-seq
28
ATAC-seq
7
DNase-seq
6
single cell RNA-seq
4
WGBS
FAIRE-seq
2
Hi-C
2
RRBS
2
small RNA-seq
1
pCHi-C
1
snATAC-seq
Assay category
278
Transcription
117
DNA binding
36
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
73
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
27
control
17
transcription factor
8
RNA binding protein
Date released
146
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
36
May, 2021
9
March, 2020
6
April, 2018
6
July, 2019
6
November, 2018
6
September, 2017
4
June, 2019
4
October, 2017
3
October, 2019
2
May, 2019
1
August, 2022
1
February, 2020
Available data
402
bam
370
bigWig
274
tsv
185
fastq
103
bed narrowPeak
60
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
2
bedpe bed3+
2
hic
Organism
433
Homo sapiens
Biosample type
440
tissue
194
primary cell
86
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
488
adipose tissue
440
pancreas
321
liver
273
heart
264
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
109
kidney
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
436
AMP
4
T1D
Genome assembly (visualization)
389
hg19
383
GRCh38
Lab
440
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans
266
50
24
1
6
1
1
1
body of pancreas
3
35
4
4
2
2
pancreas
1
16
2
2
1
1
1
endocrine pancreas
16
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