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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
total RNA-seq
49
ATAC-seq
47
WGBS
10
MeRIP-seq
3
Hi-C
Assay category
53
Transcription
49
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
80
May, 2022
37
February, 2023
19
September, 2020
10
November, 2020
7
August, 2020
6
February, 2021
3
October, 2022
Available data
80
zippedFastqFolder
69
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
162
Homo sapiens
Biosample type
152
primary cell
6
cell line
4
tissue
Organ
162
pancreas
158
epithelium
Project
152
HPAP
10
AMP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
725
AMP-T2D consortium
152
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
162 results
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total RNA-seq
ATAC-seq
WGBS
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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