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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
147
ChIP-seq
56
ATAC-seq
41
single cell RNA-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
219
Transcription
147
DNA binding
61
DNA accessibility
10
DNA methylation
Target of assay
100
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
168
August, 2017
72
September, 2018
39
July, 2018
37
February, 2023
37
October, 2018
April, 2018
24
May, 2022
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
650
bam
584
bigWig
437
fastq
378
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
430
Homo sapiens
Biosample type
230
primary cell
207
tissue
Organ
465
liver
437
pancreas
228
epithelium
100
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
368
AMP
69
HPAP
Genome assembly (visualization)
329
hg19
323
GRCh38
Lab
342
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
April, 2018
BIOSAMPLE
ASSAY
437 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
13
9
6
pancreatic beta cell
21
13
10
9
pancreatic ductal cell
4
13
4
4
pancreatic acinar cell
4
8
5
6
pancreatic endocrine cell
23
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tissue
islet of Langerhans
97
28
20
1
1
body of pancreas
33
4
2
2
pancreas
16
2
1
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