Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ATAC-seq
73
total RNA-seq
47
WGBS
26
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
pCHi-C
Assay category
105
DNA accessibility
73
Transcription
49
DNA methylation
26
DNA binding
8
3D chromatin structure
Target of assay
30
control
5
nucleotide modification
1
broad histone mark
1
histone
1
histone modification
Date released
104
May, 2022
56
February, 2023
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
98
fastq
80
zippedFastqFolder
52
bam
19
bed narrowPeak
11
tsv
7
bedpe bed3+
7
hic
6
txt
5
bigWig
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe
1
bigBed narrowPeak
1
tagAlign
Organism
274
Homo sapiens
Biosample type
142
primary cell
95
tissue
37
cell line
1
in vitro differentiated cells
Organ
275
pancreas
225
liver
218
epithelium
149
kidney
127
heart
93
bone element
69
brain
58
connective tissue
55
eye
45
vasculature
43
blood vessel
26
adipose tissue
26
limb
20
lung
17
musculature of body
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
105
AMP
28
T1D
Genome assembly (visualization)
499
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
67
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
4
audit script error
month_released!
August, 2017
assembly!
GRCh38
BIOSAMPLE
ASSAY
275 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
36
18
4
7
4
3
1
body of pancreas
1
9
pancreas
1
1
4
1
1
1
1
endocrine pancreas
2
cell line
EndoC_BH1
18
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
Download