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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
total RNA-seq
74
single cell RNA-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
407
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
August, 2021
1
February, 2020
1
June, 2018
Available data
689
bam
623
bigWig
471
fastq
416
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
416
Homo sapiens
Biosample type
274
tissue
108
primary cell
34
cell line
Organ
478
connective tissue
416
pancreas
401
adipose tissue
165
liver
156
epithelium
76
heart
62
blood vessel
62
vasculature
58
bone element
56
artery
26
brain
24
kidney
9
musculature of body
7
limb
6
embryo
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
408
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
410
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
39
inconsistent ontology term
month_released!
August, 2021
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
266
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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