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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
57
ChIP-seq
47
WGBS
31
total RNA-seq
10
MeRIP-seq
9
snATAC-seq
8
Hi-C
2
Capture-C
2
RRBS
1
pCHi-C
Assay category
109
DNA accessibility
57
DNA binding
49
DNA methylation
31
Transcription
8
3D chromatin structure
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
February, 2023
29
August, 2017
24
November, 2019
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
689
bam
bigWig
434
fastq
417
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
266
Homo sapiens
Biosample type
117
primary cell
114
tissue
35
cell line
1
in vitro differentiated cells
Organ
267
pancreas
223
kidney
171
epithelium
169
liver
133
heart
100
connective tissue
93
bone element
65
adipose tissue
63
brain
46
vasculature
45
blood vessel
31
limb
28
musculature of body
24
eye
21
artery
20
lung
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
152
AMP
105
HPAP
10
T1D
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
112
AMP-T2D consortium
105
Klaus Kaestner, Upenn
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
month_released!
February, 2023
organ_slims!
thymus
files.file_type!
bigWig
BIOSAMPLE
ASSAY
267 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
total RNA-seq
MeRIP-seq
snATAC-seq
Hi-C
Capture-C
RRBS
pCHi-C
primary cell
pancreatic alpha cell
22
6
31
15
1
pancreatic beta cell
13
6
16
1
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
44
21
13
4
5
3
1
pancreas
3
1
4
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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