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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
73
total RNA-seq
53
ChIP-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
73
Transcription
53
DNA binding
51
DNA methylation
13
DNA accessibility
1
3D chromatin structure
Target of assay
49
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
47
May, 2022
45
February, 2023
29
August, 2017
16
September, 2020
11
October, 2018
10
November, 2020
8
January, 2021
7
October, 2019
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
May, 2021
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
97
fastq
51
bam
41
zippedFastqFolder
9
tsv
6
bigWig
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bed bed3+
2
bed broadPeak
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
203
Homo sapiens
Biosample type
112
primary cell
76
tissue
16
cell line
1
in vitro differentiated cells
Organ
205
pancreas
170
heart
166
liver
150
kidney
146
epithelium
119
brain
95
connective tissue
89
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
HPAP
88
AMP
17
T1D
Genome assembly (visualization)
hg19
545
GRCh38
Lab
100
Klaus Kaestner, Upenn
71
AMP-T2D consortium
22
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
month_released!
November, 2019
assay_title!
ATAC-seq
assembly!
hg19
BIOSAMPLE
ASSAY
205 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
42
6
31
pancreatic beta cell
11
6
16
tissue
islet of Langerhans
18
19
7
4
1
body of pancreas
1
9
2
2
pancreas
1
3
2
4
1
endocrine pancreas
2
cell line
EndoC_BH1
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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