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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
ChIP-seq
Assay category
304
Transcription
135
DNA binding
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
83
histone
83
histone modification
45
broad histone mark
38
narrow histone mark
34
control
18
transcription factor
8
RNA binding protein
Date released
56
August, 2017
51
October, 2018
November, 2019
13
October, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
115
bam
92
bigWig
83
bed narrowPeak
77
fastq
59
bigBed narrowPeak
21
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
128
Homo sapiens
Biosample type
117
tissue
primary cell
15
cell line
3
in vitro differentiated cells
Organ
548
liver
209
brain
141
connective tissue
135
pancreas
129
heart
79
blood vessel
79
vasculature
73
adipose tissue
66
limb
60
blood
60
bodily fluid
37
kidney
35
nerve
34
artery
29
musculature of body
24
epithelium
22
embryo
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
131
AMP
4
T1D
Genome assembly (visualization)
94
hg19
88
GRCh38
Lab
135
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
50
body of pancreas
35
endocrine pancreas
16
pancreas
16
cell line
Panc1
13
EndoC_BH1
2
in vitro differentiated cells
pancreatic PP cell
3
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