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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ATAC-seq
73
total RNA-seq
47
WGBS
46
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
103
DNA accessibility
73
Transcription
49
DNA methylation
46
DNA binding
8
3D chromatin structure
Target of assay
45
control
14
histone
14
histone modification
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
104
May, 2022
56
February, 2023
28
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
October, 2019
8
January, 2021
8
March, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
114
fastq
80
zippedFastqFolder
61
bam
22
bed narrowPeak
11
tsv
8
bigWig
7
bedpe bed3+
7
hic
7
tagAlign
6
txt
3
bed broadPeak
3
cool
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
291
Homo sapiens
Biosample type
154
primary cell
108
tissue
30
cell line
1
in vitro differentiated cells
Organ
293
pancreas
246
liver
218
epithelium
141
kidney
126
heart
93
bone element
86
connective tissue
52
brain
46
adipose tissue
34
eye
31
musculature of body
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
142
HPAP
123
AMP
28
T1D
Genome assembly (visualization)
580
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
85
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
4
audit script error
month_released!
October, 2019
assembly!
GRCh38
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
293 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
33
18
17
7
4
3
1
1
pancreas
1
3
4
1
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
18
2
6
1
2
1
in vitro differentiated cells
pancreatic PP cell
1
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