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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
182
ChIP-seq
80
single cell RNA-seq
65
ATAC-seq
7
DNase-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
Assay category
412
Transcription
182
DNA binding
74
DNA accessibility
4
DNA methylation
Target of assay
129
histone
129
histone modification
66
broad histone mark
63
narrow histone mark
35
control
18
transcription factor
9
RNA binding protein
Date released
168
August, 2017
153
July, 2018
72
September, 2018
53
November, 2019
53
October, 2018
41
May, 2021
39
April, 2018
26
February, 2021
24
May, 2022
October, 2019
11
September, 2017
7
November, 2018
6
March, 2020
4
July, 2019
4
June, 2019
4
October, 2017
3
August, 2018
2
May, 2019
1
June, 2018
1
March, 2019
Available data
672
bam
613
bigWig
471
fastq
417
tsv
205
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
cool
1
bedpe
Organism
665
Homo sapiens
Biosample type
429
tissue
194
primary cell
49
cell line
in vitro differentiated cells
Organ
672
pancreas
659
liver
534
connective tissue
442
adipose tissue
261
epithelium
203
heart
160
brain
139
vasculature
134
blood vessel
116
kidney
76
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
46
limb
24
spleen
18
ureter
8
embryo
8
skeleton
7
eye
1
pericardium
Project
666
AMP
6
T1D
Genome assembly (visualization)
626
hg19
612
GRCh38
Lab
647
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
54
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
672 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
small RNA-seq
tissue
islet of Langerhans
266
30
6
38
1
1
body of pancreas
2
35
4
4
2
2
pancreas
1
16
2
2
1
endocrine pancreas
16
primary cell
pancreatic beta cell
10
13
12
7
pancreatic alpha cell
10
13
12
6
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
15
1
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