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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
326
total RNA-seq
80
single cell RNA-seq
6
WGBS
2
ATAC-seq
2
small RNA-seq
1
pCHi-C
Assay category
408
Transcription
6
DNA methylation
2
DNA accessibility
Date released
153
July, 2018
89
August, 2017
40
May, 2021
39
April, 2018
32
February, 2021
26
September, 2018
20
November, 2019
6
March, 2020
4
July, 2019
3
August, 2018
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
672
bam
613
bigWig
471
fastq
417
tsv
205
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
16
tagAlign
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
cool
1
bedpe
Organism
417
Homo sapiens
Biosample type
275
tissue
108
primary cell
34
cell line
Organ
473
connective tissue
417
pancreas
401
adipose tissue
173
liver
165
heart
151
epithelium
68
blood vessel
68
vasculature
58
artery
58
bone element
25
brain
18
kidney
9
musculature of body
8
embryo
5
eye
3
limb
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
409
AMP
6
HPAP
2
T1D
Genome assembly (visualization)
408
hg19
406
GRCh38
Lab
410
AMP-T2D consortium
6
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
month_released!
October, 2019
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
tissue
islet of Langerhans
261
6
1
body of pancreas
3
2
pancreas
1
1
primary cell
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
1
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