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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ATAC-seq
73
total RNA-seq
50
ChIP-seq
41
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
119
DNA accessibility
73
Transcription
50
DNA binding
43
DNA methylation
8
3D chromatin structure
Target of assay
47
control
8
histone
8
histone modification
5
nucleotide modification
4
broad histone mark
4
narrow histone mark
Date released
104
May, 2022
56
February, 2023
29
August, 2017
24
November, 2019
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
October, 2019
8
January, 2021
February, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
649
bam
bigWig
465
fastq
385
tsv
207
bed narrowPeak
84
bigBed narrowPeak
80
zippedFastqFolder
27
bed bed3+
20
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
cool
1
bedpe
Organism
305
Homo sapiens
Biosample type
148
primary cell
129
tissue
29
cell line
1
in vitro differentiated cells
Organ
307
pancreas
207
epithelium
207
kidney
165
liver
158
heart
108
connective tissue
66
adipose tissue
60
vasculature
59
blood vessel
54
brain
41
artery
34
eye
28
musculature of body
20
lung
14
blood
14
bodily fluid
9
bone element
9
spleen
8
embryo
8
limb
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
143
AMP
136
HPAP
28
T1D
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
136
Klaus Kaestner, Upenn
103
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
month_released!
October, 2019
February, 2021
files.file_type!
bigWig
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
25
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
52
18
21
7
4
3
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
in vitro differentiated cells
pancreatic PP cell
1
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