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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
19
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
Assay category
38
Transcription
20
DNA accessibility
19
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
6
control
3
nucleotide modification
2
RNA binding protein
2
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
5
June, 2019
5
March, 2020
2
August, 2021
1
July, 2019
Available data
59
bam
57
bigWig
39
tsv
18
bed narrowPeak
5
fastq
4
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
87
Homo sapiens
Biosample type
76
cell line
11
primary cell
Organ
90
epithelium
84
bone element
81
pancreas
19
connective tissue
10
kidney
9
musculature of body
6
embryo
6
heart
1
adipose tissue
1
brain
1
limb
1
stomach
1
urinary bladder
1
vasculature
Project
83
AMP
4
T1D
Genome assembly (visualization)
60
hg19
56
GRCh38
Lab
81
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
87
inconsistent ontology term
4
audit script error
month_released!
October, 2019
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
DNase-seq
Hi-C
RRBS
cell line
EndoC_BH1
33
19
15
6
2
1
primary cell
cardiac fibroblast
4
1
1
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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