Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
single cell RNA-seq
57
ATAC-seq
55
total RNA-seq
47
WGBS
38
ChIP-seq
3
Hi-C
Assay category
129
Transcription
57
DNA accessibility
47
DNA methylation
38
DNA binding
3
3D chromatin structure
Target of assay
26
histone
26
histone modification
16
narrow histone mark
12
control
10
broad histone mark
Date released
80
May, 2022
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
186
fastq
122
bam
120
bigWig
82
tsv
80
zippedFastqFolder
22
bed narrowPeak
8
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
274
Homo sapiens
Biosample type
505
tissue
274
primary cell
92
cell line
3
in vitro differentiated cells
Organ
345
epithelium
274
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
152
HPAP
122
AMP
Genome assembly (visualization)
120
GRCh38
113
hg19
Lab
152
Klaus Kaestner, Upenn
122
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
12
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
September, 2018
BIOSAMPLE
ASSAY
274 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
12
32
42
31
13
1
pancreatic beta cell
12
19
11
16
13
1
pancreatic acinar cell
12
6
2
1
pancreatic endocrine cell
12
pancreatic delta cell
11
+ See 5 more…
See all biosamples
Download