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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
total RNA-seq
19
ATAC-seq
17
ChIP-seq
1
DNase-seq
1
Hi-C
Assay category
41
Transcription
20
DNA accessibility
17
DNA binding
1
3D chromatin structure
Target of assay
9
histone
9
histone modification
7
control
5
narrow histone mark
4
broad histone mark
1
transcription factor
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
58
bam
51
bigWig
40
tsv
10
bed narrowPeak
7
bigBed narrowPeak
3
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
79
Homo sapiens
Biosample type
40
tissue
36
cell line
3
in vitro differentiated cells
Organ
86
brain
79
pancreas
69
limb
61
epithelium
47
blood vessel
47
vasculature
42
nerve
30
kidney
26
artery
21
eye
21
vein
11
heart
7
liver
6
connective tissue
4
gonad
4
ovary
2
embryo
2
pituitary gland
1
adipose tissue
1
bone element
1
bone marrow
1
lymph node
1
skin of body
1
thymus
Project
78
AMP
1
T1D
Genome assembly (visualization)
51
GRCh38
51
hg19
Lab
78
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
21
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
79 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
36
3
pancreas
1
cell line
EndoC_BH1
4
16
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
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