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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
41
WGBS
11
total RNA-seq
3
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
61
DNA accessibility
41
DNA methylation
11
Transcription
3
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
80
zippedFastqFolder
30
bam
24
fastq
21
bed narrowPeak
10
bigWig
6
tsv
6
txt
1
bedpe bed3+
1
hic
Organism
118
Homo sapiens
Biosample type
80
primary cell
33
tissue
5
cell line
Organ
118
pancreas
86
epithelium
43
liver
7
heart
7
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
80
HPAP
31
AMP
7
T1D
Genome assembly (visualization)
29
hg19
6
GRCh38
Lab
80
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
14
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ATAC-seq
WGBS
total RNA-seq
ChIP-seq
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
20
8
2
pancreas
1
1
1
cell line
EndoC_BH1
2
2
1
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