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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
7
ATAC-seq
2
Hi-C
1
DNase-seq
Assay category
13
DNA binding
8
DNA accessibility
2
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
broad histone mark
3
narrow histone mark
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
15
bam
8
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
1
bedpe
1
bigBed broadPeak
1
fastq
1
hdf5
1
hic
Organism
23
Homo sapiens
Biosample type
15
cell line
8
tissue
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
35
epithelium
30
kidney
26
artery
23
pancreas
21
eye
21
vein
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
23
AMP
Genome assembly (visualization)
11
hg19
10
GRCh38
Lab
18
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
DNase-seq
cell line
Panc1
13
1
1
tissue
islet of Langerhans
7
1
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