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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ChIP-seq
2
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
33
Transcription
19
DNA binding
3
DNA accessibility
1
3D chromatin structure
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
12
November, 2019
8
October, 2019
5
March, 2020
5
May, 2021
Available data
63
bam
56
bigWig
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
56
Homo sapiens
Biosample type
373
tissue
192
primary cell
56
cell line
2
in vitro differentiated cells
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
52
AMP
4
T1D
Genome assembly (visualization)
56
hg19
54
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
48
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
ovary
BIOSAMPLE
ASSAY
56 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
EndoC_BH1
33
13
2
Panc1
6
1
1
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