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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
8
DNase-seq
3
snATAC-seq
2
FAIRE-seq
Assay category
479
Transcription
218
DNA binding
165
DNA accessibility
53
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
165
Homo sapiens
Biosample type
74
tissue
71
primary cell
20
cell line
Organ
165
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
103
AMP
49
HPAP
13
T1D
Genome assembly (visualization)
79
hg19
67
GRCh38
Lab
80
AMP-T2D consortium
49
Klaus Kaestner, Upenn
31
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
organ_slims!
ovary
month_released!
January, 2021
BIOSAMPLE
ASSAY
165 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
58
1
3
1
body of pancreas
4
4
pancreas
2
1
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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