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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
403
Transcription
152
DNA accessibility
Date released
120
July, 2018
92
August, 2017
63
May, 2022
57
May, 2021
53
February, 2023
40
November, 2019
40
September, 2018
26
February, 2021
19
September, 2020
9
March, 2020
7
August, 2020
6
April, 2018
5
October, 2017
5
September, 2017
4
March, 2019
3
October, 2019
2
July, 2019
2
October, 2018
1
August, 2021
1
February, 2020
Available data
401
bam
371
bigWig
334
tsv
240
fastq
64
bed narrowPeak
39
zippedFastqFolder
22
bigBed narrowPeak
6
txt
2
bed broadPeak
Organism
555
Homo sapiens
Biosample type
351
tissue
152
primary cell
52
cell line
Organ
555
pancreas
499
connective tissue
404
adipose tissue
234
epithelium
212
liver
135
kidney
119
heart
107
blood vessel
107
vasculature
101
artery
74
bone element
47
eye
21
brain
16
skeleton
15
limb
14
embryo
7
musculature of body
6
nerve
1
blood
1
bodily fluid
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
spleen
Project
433
AMP
102
HPAP
20
T1D
Genome assembly (visualization)
401
hg19
389
GRCh38
Lab
406
AMP-T2D consortium
102
Klaus Kaestner, Upenn
41
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
52
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
555 results
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Clear Filters
total RNA-seq
ATAC-seq
tissue
islet of Langerhans
284
58
body of pancreas
3
4
pancreas
2
primary cell
pancreatic alpha cell
52
35
pancreatic beta cell
21
23
pancreatic acinar cell
4
9
pancreatic ductal cell
4
4
cell line
EndoC_BH1
33
19
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