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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
total RNA-seq
37
single cell RNA-seq
11
ATAC-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
199
Transcription
13
DNA accessibility
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
153
bam
153
bigWig
153
tsv
76
fastq
Organism
212
Homo sapiens
Biosample type
138
tissue
74
primary cell
1
cell line
Organ
213
pancreas
85
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
16
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
158
AMP
37
HPAP
18
T1D
Genome assembly (visualization)
153
GRCh38
153
hg19
Lab
158
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
organ_slims!
spleen
BIOSAMPLE
ASSAY
213 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
tissue
islet of Langerhans
125
11
2
primary cell
pancreatic alpha cell
27
7
pancreatic beta cell
10
9
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic ductal cell
3
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cell line
EndoC_BH1
1
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