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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
153
ATAC-seq
126
ChIP-seq
74
single cell RNA-seq
51
WGBS
19
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
126
DNA binding
Target of assay
histone
152
histone modification
78
broad histone mark
74
narrow histone mark
70
transcription factor
54
control
19
RNA binding protein
10
chromatin remodeller
Date released
28
August, 2017
27
December, 2018
21
October, 2018
17
January, 2019
15
November, 2018
6
October, 2019
6
September, 2017
3
November, 2019
2
May, 2021
1
May, 2019
Available data
120
bam
106
fastq
72
bigWig
66
bed narrowPeak
63
bigBed narrowPeak
9
bed bed3+
4
tagAlign
Organism
125
Homo sapiens
Biosample type
68
cell line
44
tissue
12
primary cell
2
in vitro differentiated cells
Organ
450
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
126
AMP
Genome assembly (visualization)
74
GRCh38
74
hg19
Lab
126
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
6
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
cell line
GM12878
59
Panc1
6
EndoC_BH1
3
tissue
islet of Langerhans
20
body of pancreas
18
pancreas
4
endocrine pancreas
2
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
2
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