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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
302
total RNA-seq
159
ChIP-seq
50
ATAC-seq
6
DNase-seq
5
Hi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
304
Transcription
159
DNA binding
58
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
85
histone
85
histone modification
70
transcription factor
46
broad histone mark
39
narrow histone mark
19
RNA binding protein
10
chromatin remodeller
2
control
Date released
130
August, 2017
116
July, 2018
53
November, 2019
43
May, 2021
40
October, 2018
27
December, 2018
26
February, 2021
18
May, 2022
15
January, 2019
15
November, 2018
11
March, 2020
8
October, 2019
6
April, 2018
6
July, 2019
5
October, 2017
3
March, 2019
2
June, 2019
2
September, 2017
1
January, 2018
1
May, 2019
Available data
507
bam
480
bigWig
306
tsv
240
fastq
198
bed narrowPeak
121
bigBed narrowPeak
27
bed bed3+
18
bed broadPeak
14
tagAlign
5
bigBed broadPeak
4
hic
3
bedpe bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe
1
hdf5
Organism
522
Homo sapiens
Biosample type
413
tissue
primary cell
113
cell line
2
in vitro differentiated cells
Organ
612
liver
555
connective tissue
473
pancreas
424
adipose tissue
178
heart
143
brain
134
blood vessel
134
vasculature
104
kidney
96
limb
91
artery
84
epithelium
70
bone element
61
musculature of body
55
blood
55
bodily fluid
31
nerve
30
eye
29
embryo
18
ureter
14
spleen
12
skeleton
1
pericardium
1
pituitary gland
Project
522
AMP
6
T1D
Genome assembly (visualization)
528
hg19
497
GRCh38
Lab
506
AMP-T2D consortium
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
50
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
528 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans
266
31
42
1
2
1
1
body of pancreas
2
26
4
2
2
pancreas
1
13
2
1
1
1
endocrine pancreas
14
cell line
GM12878
54
1
EndoC_BH1
33
13
3
1
Panc1
6
1
1
in vitro differentiated cells
pancreatic PP cell
2
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