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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
total RNA-seq
152
ChIP-seq
82
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
7
DNase-seq
6
Hi-C
4
WGBS
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
pCHi-C
Assay category
235
Transcription
152
DNA binding
101
DNA accessibility
6
3D chromatin structure
6
DNA methylation
Target of assay
63
transcription factor
54
histone
54
histone modification
38
control
29
broad histone mark
25
narrow histone mark
17
RNA binding protein
10
chromatin remodeller
5
nucleotide modification
Date released
August, 2017
120
July, 2018
61
May, 2021
55
November, 2019
51
October, 2018
27
December, 2018
26
February, 2021
24
May, 2022
22
November, 2018
19
February, 2023
18
January, 2019
18
October, 2019
14
March, 2020
10
November, 2020
8
January, 2021
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
2
May, 2019
1
August, 2022
1
February, 2020
1
January, 2018
Available data
428
bam
356
bigWig
220
tsv
168
bed narrowPeak
146
fastq
109
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
3
tagAlign
1
bedpe
1
hdf5
Organism
513
Homo sapiens
Biosample type
358
tissue
primary cell
153
cell line
3
in vitro differentiated cells
Organ
723
liver
520
connective tissue
453
pancreas
432
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
61
blood
61
bodily fluid
56
eye
56
musculature of body
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
480
AMP
34
T1D
Genome assembly (visualization)
398
hg19
374
GRCh38
Lab
445
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
76
inconsistent ontology term
1
audit script error
1
inconsistent control
Audit category:
1
inconsistent assembly
1
inconsistent control read length
month_released!
August, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
514 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
pCHi-C
tissue
islet of Langerhans
195
8
58
7
4
3
1
body of pancreas
3
35
4
4
2
2
endocrine pancreas
16
pancreas
2
2
4
2
1
2
1
1
1
cell line
EndoC_BH1
33
15
19
6
1
2
1
GM12878
60
1
Panc1
13
1
1
in vitro differentiated cells
pancreatic PP cell
3
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