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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
20
ATAC-seq
7
total RNA-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
88
DNA binding
21
DNA accessibility
7
Transcription
2
3D chromatin structure
Target of assay
52
transcription factor
20
histone
20
histone modification
17
control
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
3
nucleotide modification
Date released
27
December, 2018
February, 2021
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
15
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
1
January, 2018
Available data
97
bam
85
bigWig
75
bed narrowPeak
61
bigBed narrowPeak
60
fastq
8
tsv
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
126
Homo sapiens
Biosample type
505
tissue
348
primary cell
127
cell line
3
in vitro differentiated cells
Organ
399
liver
66
pancreas
61
blood
61
bodily fluid
53
epithelium
19
kidney
8
embryo
1
mammary gland
Project
123
AMP
4
T1D
Genome assembly (visualization)
87
hg19
83
GRCh38
Lab
121
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
50
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
GM12878
60
1
EndoC_BH1
15
19
7
6
2
1
1
Panc1
13
1
1
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