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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
67
total RNA-seq
41
WGBS
20
ChIP-seq
19
snATAC-seq
10
MeRIP-seq
9
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
107
DNA accessibility
67
Transcription
43
DNA methylation
20
DNA binding
9
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
80
May, 2022
56
February, 2023
20
August, 2017
19
September, 2020
17
May, 2021
16
January, 2021
10
November, 2020
8
March, 2020
7
August, 2020
February, 2021
4
August, 2021
4
July, 2018
4
March, 2019
4
October, 2019
3
October, 2022
2
July, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
January, 2018
1
October, 2017
Available data
bam
652
bigWig
525
fastq
385
tsv
268
bed narrowPeak
145
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
259
Homo sapiens
Biosample type
154
primary cell
76
tissue
30
cell line
Organ
251
pancreas
202
kidney
201
epithelium
142
heart
108
liver
87
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
146
HPAP
78
AMP
36
T1D
Genome assembly (visualization)
24
hg19
14
GRCh38
Lab
146
Klaus Kaestner, Upenn
62
AMP-T2D consortium
35
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
month_released!
February, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
25
1
pancreatic beta cell
16
11
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
12
20
7
4
3
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
18
6
1
2
1
GM12878
1
Panc1
1
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