Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
94
total RNA-seq
7
ATAC-seq
1
DNase-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
97
DNA binding
94
Transcription
9
DNA accessibility
1
3D chromatin structure
Target of assay
69
histone
69
histone modification
37
narrow histone mark
32
broad histone mark
21
control
7
transcription factor
2
RNA binding protein
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
27
December, 2018
22
November, 2018
19
September, 2020
18
January, 2019
18
October, 2019
16
January, 2021
14
March, 2020
11
September, 2017
10
November, 2020
7
August, 2020
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
January, 2018
1
June, 2018
Available data
174
bam
169
bigWig
168
fastq
95
tsv
52
bed narrowPeak
19
bed bed3+
17
bigBed narrowPeak
16
tagAlign
12
bed broadPeak
1
bedpe bed3+
1
hic
Organism
195
Homo sapiens
Biosample type
156
tissue
41
primary cell
5
cell line
Organ
202
pancreas
127
connective tissue
58
adipose tissue
57
liver
35
epithelium
31
musculature of body
7
heart
4
blood vessel
4
vasculature
2
brain
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
0
blood
Project
195
AMP
7
T1D
Genome assembly (visualization)
170
hg19
158
GRCh38
Lab
202
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
202 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
44
91
2
1
1
pancreas
14
1
1
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
EndoC_BH1
1
2
2
Download