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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
total RNA-seq
78
single cell RNA-seq
2
small RNA-seq
Assay category
500
Transcription
282
DNA binding
206
DNA accessibility
59
DNA methylation
13
3D chromatin structure
Date released
159
July, 2018
89
August, 2017
44
February, 2023
43
May, 2021
41
April, 2018
26
February, 2021
26
September, 2018
20
November, 2019
16
September, 2020
9
July, 2019
6
May, 2022
5
December, 2019
5
March, 2020
3
August, 2018
3
October, 2019
2
October, 2018
1
August, 2021
1
February, 2020
1
June, 2018
Available data
431
bam
429
tsv
425
bigWig
257
fastq
6
txt
Organism
500
Homo sapiens
Biosample type
293
tissue
171
primary cell
34
cell line
2
in vitro differentiated cells
Organ
481
connective tissue
479
pancreas
401
adipose tissue
201
epithelium
193
liver
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
14
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
438
AMP
53
HPAP
9
T1D
Genome assembly (visualization)
425
GRCh38
425
hg19
Lab
434
AMP-T2D consortium
53
Klaus Kaestner, Upenn
12
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
500 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
islet of Langerhans
284
body of pancreas
3
2
pancreas
2
pigmented layer of retina
2
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 14 more…
cell line
EndoC_BH1
33
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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